* - first author;  & - corresponding author; # - editor's pick
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  1. *Monteagudo-Cascales E., *Gumerov V.M., Fernández M., Matilla M.A., Gavira J.A., Zhulin I.B., Krell T. (2024) Ubiquitous purine sensor modulates diverse signal transduction pathways in bacteria. Nature Communications, 15, 5867 (2024).
  2. Ross P.A., Xu W., Jalomo-Khayrova E., Bange G., Gumerov V.M., Bradley P.H., Sourjik V., Zhulin I.B (2024) Framework for exploring the sensory repertoire of the human gut microbiota. mBio, 15:e01039-24.
  3. ​&Gumerov V.M., Ulrich L.E., &Zhulin I.B. (2024) MiST 4.0: a new release of the microbial signal transduction database, now with a metagenomic component. Nucleic Acids Research, 52: D647–D653. Link to the database https://mistdb.com/
  4. *Cerna-Vargas J-P.,  *Gumerov V.M., Krell T., Zhulin I.B. (2023) Amine recognizing domain in diverse receptors from bacteria and archaea evolved from the universal amino acid sensor. PNAS, 120, e2305837120.
  5. Xing J., Gumerov V.M., Zhulin I.B. (2023) Origin and functional diversification of PAS domain, a ubiquitous intracellular sensor. Science Advances​ 9(35):eadi4517
  6. *Demey L.M., *Gumerov V.M., Xing J., Zhulin I.B., DiRita V.J. (2023) Transmembrane Transcription Regulators are widespread in Bacteria and Archaea. Microbiology Spectrum, spectrum.00266-23.
  7. Page K. M., Gumerov V.M., Dahimene S., Zhulin I.B., Dolphin A.C. (2023) The importance of cache domains in α2δ proteins and the basis for their gabapentinoid selectivity. Channels, 17 (1) 2167563.
  8. Gumerov V.M., Andrianova E.P., Matilla M.A., Page K.M. , Monteagudo-Cascales E., Dolphin A.C., Krell T., Zhulin I.B. (2022) Amino acid sensor conserved from bacteria to humans. PNAS, 119 (10) e2110415119.​
  9. Popp P.F, Gumerov V.M., Andrianova E.P., Bewersdorf L., Mascher T., Zhulin I.B., and Wolf D. (2022) Phyletic Distribution and Diversification of the Phage Shock Protein Stress Response System in Bacteria and Archaea. mSystems, e01348-21.
  10. Xing J., Gumerov V.M., Zhulin I.B. (2022) Photoactive Yellow Protein Represents a Distinct, Evolutionarily Novel Family of PAS Domains. J Bacteriol, e0030022. doi: 10.1128/jb.00300-22 #
  11. Matilla M.A., Montegudo-Cascales E., Vargas J.P.C., Gumerov V.M., Zhulin I.B., Krell T. (2022) Is it possible to predict signal molecules that are recognized by bacterial receptors? Environ Microbiol., 2022: 1-6​.
  12. Westoby M., Nielsen D.A., Gillings M.R., Gumerov V.M., Madin J.S., Paulsen I.T., Tetu S.G. (2021) Strategic traits of bacteria and archaea vary widely within substrate-use groups. FEMS Microbiology Ecology, 97: fiab142.
  13. Gumerov V.M., Andrianova E.P., Zhulin I.B. (2021) Diversity of bacterial chemosensory systems.  Current Opinion in Microbiology, 61: 42-50.
  14. Nielsen D.A., Fierer N., Geoghegan J.L., Gillings M.R., Gumerov V., Madin J.S., Moore L., Paulsen I.T., Reddy T. B. K. R, Tetu S.G., Westoby M. (2020) Aerobic bacteria and archaea tend to have larger and more versatile genomes.  Oikos, 130: 501-511.
  15. *Wang B., *Gumerov V.M., Andrianova E.P., Zhulin I.B., Artsimovitch I. (2020) Origins and Molecular Evolution of the NusG Paralog RfaH. mBio, 11: e02717-20.  #
  16. &Gumerov V.M. and Zhulin I.B. (2020) TREND: a platform for exploring protein function in prokaryotes based on phylogenetic, domain architecture and gene neighborhood analyses. Nucleic Acids Res., 48: W72-W76.
  17. Gumerov V.M., Ortega D.R., Adebali O., Ulrich L.E., Zhulin I.B. (2020) MiST 3.0: an updated microbial signal transduction database with an emphasis on chemosensory systems. Nucleic Acids Res., 48: D459-D464.
  18. *Gavira J.A., *Gumerov V.M., *Rico-Jimenez M., Petukh M., Ortega A., Matilla M.A., Zhulin I.B., Krell T. (2020) How Bacterial Chemoreceptors Evolve Novel Ligand Specificities. mBio, 11: e03066-19.   #
  19.  Muok A.R., Deng Y., Gumerov V.M., Chong J.E., DeRosa J.R., Kurniyati K., Coleman R.E., Lancaster K.M., Li C., Zhulin I.B, Crane B.R. (2019) A di-iron protein recruited as an Fe[II] and oxygen sensor for bacterial chemotaxis functions by stabilizing  an iron-peroxy species. PNAS, 116: 14955-14960.
  20. Mardanov A.V., Gumerov V.M., Beletsky A.V. Ravin N.V. (2018) Microbial diversity in acidic thermal pools in the Uzon Caldera, Kamchatka. Antonie Van Leeuwenhoek, 111: 35-43.
  21. Sorokin D.Y., Rakitin A.L., Gumerov V.M., Beletsky A.V., Sinninghe Damsté J.S., Mardanov A.V., Ravin N.V. (2016) Phenotypic and genomic properties of Chitinispirillum alkaliphilum gen. nov., sp. nov., a haloalkaliphilic anaerobic chitinolytic bacterium from the candidate phylum TG3. Front Microbiol, 7: 407.
  22. Gumerov V., Hegyi H. (2015) MicroRNA-derived network analysis of differentially methylated genes in schizophrenia, implicating GABA receptor B1 [GABBR1] and protein kinase B [AKT1]. Biol Direct, 10:59. 
  23. Chernyh N.A, Mardanov A.V., Gumerov V.M., Miroshnichenko M.L., Lebedinsky A.V., Merkel A.Y., Crowe D., Pimenov N.V., Rusanov I.I., Ravin N.V., Bonch-Osmolovskaya E.A. (2015) Microbial life in Bourlyshy, the hottest thermal pool of Uzon Caldera, Kamchatka. Extremophiles, 19: 1157-1171.
  24. Gumerov V.M., Rakitin A.L., Mardanov A.V., Ravin N.V. (2015) A novel highly thermostable multifunctional beta-glycosidase from crenarchaeon Acidilobus saccharovorans. Archaea, 2015: 978632.
  25. Sorokin D.Y., Gumerov V.M., Rakitin A.L., Beletsky A.V., Sinninghe Damsté J.S., Muyzer G., Mardanov A.V., Ravin N.V. (2014) Genome analysis of Chitinivibrio alkaliphilus gen. nov., sp. nov., a novel extremely haloalkaliphilic anaerobic chitinolytic bacterium from the candidate phylum TG3. Environ. Microbiol., 16: 1549-1565.
  26. Lebedinsky A.V., Mardanov A.V., Kublanov I.V., Gumerov V.M., Beletsky A.V., Perevalova A.A., Bidzhieva Skh. et al. (2014) Analysis of the complete genome of Fervidococcus fontis confirms the distinct phylogenetic position of the order Fervidicoccales and suggests its environmental function.  Extremophiles, 18: 295-309. 
  27. Trofimov A.A., Polyakov K.M., Tikhonov A.V., Bezsudnova E.Y., Dorovatovskii P.V., Gumerov V.M., Ravin N.V., Skryabin K.G., Popov V.O. (2013) Structures of β-glycosidase from Acidilobus saccharovorans in complexes with tris and glycerol. Dokl Biochem Biophys., 449: 99-101.
  28. Stekhanova T.N., Bezsudnova E.Y., Mardanov A.V., Gumerov V.M., Artemova N., Kleymenov S.Y., Popov V.O. (2013) Sodium chloride-induced modulation of the activity and thermal stability of short-chain oxidoreductase from the archaeon Thermococcus sibiricus. Appl Biochem Biotechnol., 171: 1877-1889.
  29. Mardanov A.V., Beletsky A.V., Gumerov V.M., Karbysheva E.A., Mikheeva L.E. (2013) New low-copy plasmid in cyanobacterium Anabaena variabilis. Genetika, 49: 921-929. 
  30. Mardanov A.V., Gumerov V.M., Slobodkina G.B., Beletsky AV., Bonch-Osmolovskaya E.A., Ravin N.V., Skryabin, K.G. (2012) Complete genome sequence of strain 1860, a crenarchaeon of the genus Pyrobaculum able to grow with various electron acceptors. J Bacteriol., 194: 727-728.
  31. Slutskaya E.S., Bezsudnova E.Y., Mardanov A.V., Gumerov V.M., Rakitina T.V., Popov V.O., Lipkin V.M. (2012) Characterization of a novel M42 aminopeptidase from crenarchaeon Desulfurococcus kamchatkensis. Dokl Biochem Biophys., 442: 30-32.
  32. Trofimov A.A., Slutskaya E.A., Polyakov K.M., Dorovatovskii P.V., Gumerov V.M., Popov V.O. (2012) Influence of intermolecular contacts on the structure of recombinant prolidase from Thermococcus sibiricus. Acta Crystallogr Sect F Struct Biol Cryst Commun., 68: 1275-1278.
  33. Gumerov V.M., Mardanov A.V., Kolosov P.M., Ravin N.V. (2012) Isolation and functional characterization of lipase from the thermophilic alkali-tolerant bacterium Thermosyntropha lipolytica. Prikl Biokhim Mikrobiol., 48:  376-382.
  34. Bezsudnova E.Y., Boyko K.M., Polyakov K.M., Dorovatovskiy P.V., Stekhanova T.N., Gumerov V.M., Ravin N.V., Skryabin K.G., Kovalchuk M.V., Popov V.O. (2012) Structural insight into the molecular basis of polyextremophilicity of short-chain alcohol dehydrogenase from the hyperthermophilic archaeon Thermococcus sibiricus. Biochimie. 94: 2628-2638.
  35. Slutskaya E.S., Bezsudnova E.Y., Mardanov A.V., Safenkova I.V., Kleimenov S.Y., Chebotareva N.A., Gumerov V.M., Ravin N.V., Skryabin K.G, Popov V.O.  (2012) Iron-dependent superoxide dismutase from novel thermoacidophilic crenarchaeon Acidilobus saccharovorans: from gene to active enzyme. Biochemistry (Mosc), 77: 1368-1376.
  36. Gumerov V.M., Mardanov A.V., Beletsky A.V., Prokofeva M.I., Bonch-Osmolovskaya E.A., Ravin N.V., Skryabin K.G. (2011) Complete genome sequence of "Vulcanisaeta moutnovskia" strain 768-28, a novel member of the hyperthermophilic crenarchaeal genus Vulcanisaeta. J Bacteriol., 193: 2355-2356.
  37. Mardanov A.V., Gumerov V.M., Beletsky A.V., Prokofeva M.I., Bonch-Osmolovskaya E.A., Ravin N.V., Skryabin K.G.  (2011) Complete genome sequence of the thermoacidophilic crenarchaeon Thermoproteus uzoniensis 768-20. J Bacteriol., 193:  3156-3157.
  38. Mardanov A.V., Gumerov V.M., Beletsky A.V., Perevalova A.A., Karpov G.A., Bonch-Osmolovskaya E.A., Ravin N.V. (2011) Uncultured archaea dominate in the thermal groundwater of Uzon Caldera, Kamchatka. Extremophiles, 15:  365-372.
  39. Gumerov V.M., Mardanov A.V., Beletsky A.V., Bonch-Osmolovskaia E.A., Ravin N.V. (2011) Molecular analysis of microbial diversity in the Zavarzin Spring, Uzon Caldera, Kamchatka. Mikrobiology, 80: 244-251.
  40. Mardanov A.V., Gumerov V.M., Beletsky A.V., Bonch-Osmolovskaya E.A., Ravin N.A., Skryabin K.G. (2010) Characteristic of biodiversity of thermophilic microbial community by parallel pyrosequencing method.  Dokl Biochem and Biophysics, 432: 110-113.
  41. Stekhanova T.N., Mardanov A.V., Bezsudnova E.Y., Gumerov V.M., Ravin N.V., Skryabin K.G., Popov V.O. (2010) Characterization of a thermostable short-chain alcohol dehydrogenase from the hyperthermophilic archaeon Thermococcus sibiricus. Appl Environ Microbiol, 76: 4096-4098.
  42. Lyashenko A.V., Bezsudnova E.Y., Gumerov V.M., Lashkov A.A., Mardanov A.V., Mikhailov A.M., Polyakov K.M., Popov V.O., Ravin N.V., Skryabin K.G., Zabolotniy V.K., Stekhanova T.N., Kovalchuk M.V. (2010) Expression, purification and crystallization of a thermostable short-chain alcohol dehydrogenase from the archaeon Thermococcus sibiricus. Acta Crystallogr Sect F Struct Biol Cryst Commun., 66: 655-657.
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